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User Guide

  • Overview
  • Quick-start
  • Tutorials
    • Installation guide
    • RSS workflow
      • Brief overview
      • Input YAML configuration file
      • Quick start
      • Examples
    • Phonon workflow
      • Out-of-the-box workflow
      • Generating reference data
      • Fitting phonon-accurate potentials
      • Benchmark of ML-based phonon structure
    • Executable tutorials
      • Iterative DFT vs MLIP benchmark workflow for phonons
      • RSS Workflow

Reference

  • API reference
    • autoplex.auto
      • autoplex.auto.phonons
        • autoplex.auto.phonons.flows
        • autoplex.auto.phonons.jobs
      • autoplex.auto.rss
        • autoplex.auto.rss.flows
        • autoplex.auto.rss.jobs
    • autoplex.benchmark
      • autoplex.benchmark.phonons
        • autoplex.benchmark.phonons.flows
        • autoplex.benchmark.phonons.jobs
        • autoplex.benchmark.phonons.utils
      • autoplex.benchmark.rss
    • autoplex.data
      • autoplex.data.common
        • autoplex.data.common.flows
        • autoplex.data.common.jobs
        • autoplex.data.common.utils
      • autoplex.data.phonons
        • autoplex.data.phonons.flows
        • autoplex.data.phonons.jobs
        • autoplex.data.phonons.utils
      • autoplex.data.rss
        • autoplex.data.rss.flows
        • autoplex.data.rss.jobs
        • autoplex.data.rss.utils
    • autoplex.fitting
      • autoplex.fitting.common
        • autoplex.fitting.common.flows
        • autoplex.fitting.common.jobs
        • autoplex.fitting.common.regularization
        • autoplex.fitting.common.utils
      • autoplex.fitting.phonons
      • autoplex.fitting.rss
    • autoplex.settings
      • AutoplexBaseModel
      • BcurParams
      • BuildcellOptions
      • CustomIncar
      • GAPGeneralSettings
      • GAPSettings
      • JACESettings
      • LossCoeff
      • M3GNETSettings
      • MACESettings
      • MLIPHypers
      • NEPSettings
      • NEQUIPSettings
      • Nonlinearity
      • ResumeFromPreviousState
      • RssConfig
      • SoapParas
      • SoapSettings
      • ThreebSettings
      • TwobSettings

Contributing Guide

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About

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  • .md

Phonon workflow

Phonon workflow#

The section gives the instructions for the phonon-related workflow.

  • Out-of-the-box workflow
    • Phonon-accurate machine-learned potentials workflow
    • General workflow
      • Before running the workflow
      • Test DFT run times and memory requirements
    • Now start the workflow
    • Output and results
    • Iterative version of the default workflow
  • Generating reference data
    • Single-atom displaced supercell structures
    • Rattled supercell structures
    • Adjust supercell settings
    • VASP settings
  • Fitting phonon-accurate potentials
    • General settings
    • GAP
    • ACE
    • Nequip
    • M3GNet
    • MACE
      • Finetuning MACE-MP-0
    • Example script for autoplex workflow using GAP to fit and benchmark a Si database
    • Running a MLIP fit only
    • Is it possible to run the DFT calculations and the MLIP fitting step on different machines?
  • Benchmark of ML-based phonon structure
    • General settings
    • Error metrics
    • Run a benchmark with a pre-existing DFT calculation and GAP potential

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Examples

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Out-of-the-box workflow

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